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Altools

Altools

Uses the BWA/SAMtools/VarScan pipeline to call SNPs and indels, and the dnaCopy algorithm for genome segmentation to identify copy number variations. Uses insert size information to detect large deletions.

Topic

DNA polymorphism, Sequence analysis, GWAS study

Details

Publications

Camiolo S, Sablok G, Porceddu A "Altools: a user friendly NGS data analyser." Biol. Direct 2016; 11(1):8 https://doi.org/10.1186/s13062-016-0110-0
PMID: 26883204
PMCID: PMC4756442


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