Uses the BWA/SAMtools/VarScan pipeline to call SNPs and indels, and the dnaCopy algorithm for genome segmentation to identify copy number variations. Uses insert size information to detect large deletions.
DNA polymorphism, Sequence analysis, GWAS study
Camiolo S, Sablok G, Porceddu A "Altools: a user friendly NGS data analyser." Biol. Direct 2016; 11(1):8 https://doi.org/10.1186/s13062-016-0110-0
PMID: 26883204
PMCID: PMC4756442
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads