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AnnTools

AnnTools

A tool annotating single nucleotide substitutions (SNP/SNV), indels, and copy number variations (CNV) in sequencing and microarray data.

Topic

Biology, Genetics, DNA polymorphism

Details

  • Operation: Sequence annotation, Genome annotation, SNP annotation
  • Software interface: Command-line interface
  • Language: Python
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: BSD License
  • Cost: -
  • Version name: 1.1
  • Credit: Makarov V, O'Grady T, Cai G, Lihm J, Buxbaum JD, Yoon S.
  • Contact: makarovv at gmail.com
  • Collection: -

Publications

Makarov V, O'Grady T, Cai G, Lihm J, Buxbaum JD, Yoon S "AnnTools: a comprehensive and versatile annotation toolkit for genomic variants." Bioinformatics 2012; 28(5):724-5 https://doi.org/10.1093/bioinformatics/bts032
PMID: 22257670
PMCID: PMC3289923


Download and documentation




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