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BAM-matcher

BAM-matcher

A tool to determine if two separate BAM files contain reads sequenced from the same sample by counting genotype matches at SNPs.

Topic

Biology, Genetics

Details

  • Operation: Comparison, Nucleic acid comparison, Nucleic acid sequence comparison
  • Software interface: Command-line interface
  • Language: Python
  • Operating system: Linux
  • License: CC BY 4.0
  • Cost: -
  • Version name: -
  • Credit: Wang PP, Parker WT, Branford S, Schreiber AW.
  • Contact: paul.wang at sa.gov.au
  • Collection: -

Publications

Wang PP, Parker WT, Branford S, Schreiber AW "BAM-matcher: a tool for rapid NGS sample matching." Bioinformatics 2016; 32(17):2699-701 https://doi.org/10.1093/bioinformatics/btw239
PMID: 27153667


Download and documentation




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