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CASMAP

CASMAP

Detects statistically significant combinations of single nucleotide polymorphisms (SNPs) in association mapping, and can make corrections of categorical covariates, such as age and gender. The tool is also avalable as an R package.

Topic

Biology, Genetics, DNA polymorphism

Details

  • Operation: SNP detection, Statistical modelling
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux, Mac OS X
  • License: GNU GPL v2+
  • Cost: Free
  • Version name: -
  • Credit: Llinares-López F, Papaxanthos L, Roqueiro D, Bodenham D, Borgwardt K.
  • Contact: Karsten Borgwardt karsten.borgwardt at bsse.ethz.ch
  • Collection: -

Publications

Llinares-López F, Papaxanthos L, Roqueiro D, Bodenham D, Borgwardt K. "CASMAP: Detection of statistically significant combinations of SNPs in association mapping." Bioinformatics 2018 Dec;():. https://doi.org/10.1093/bioinformatics/bty1020
PMID: 30541062
PMCID: PMC6662083


Download and documentation




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