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CPAP

CPAP

A Cancer Panel Analysis Pipeline (CPAP) uses input files from variant calling software to generate a distribution map of SNPs among all of the samples. It also integrates additional information about the identified SNPs by linking to an integrated SQL database compiled from SNP-related databases, including dbSNP, 1000 Genomes Project, COSMIC, and dbNSFP.

Topic

Biology, Genetics, Genetic variation, DNA polymorphism

Details

  • Operation: Query and retrieval, Database search
  • Software interface: Web user interface
  • Language: -
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: Huang PJ, Yeh YM, Gan RC, Lee CC, Chen TW, Lee CY, Liu H, Chen SJ, Tang P.
  • Contact: pjhuang at mail.cgu.edu.tw
  • Collection: -

Publications

Huang PJ, Yeh YM, Gan RC, Lee CC, Chen TW, Lee CY, Liu H, Chen SJ, Tang P "CPAP: Cancer Panel Analysis Pipeline." Hum. Mutat. 2013; 34(10):1340-6 https://doi.org/10.1002/humu.22386
PMID: 23893859


Huang PJ, Lee CC, Tan BC, Yeh YM, Huang KY, Gan RC, Chen TW, Lee CY, Yang ST, Liao CS, Liu H, Tang P "Vanno: a visualization-aided variant annotation tool." Hum. Mutat. 2015; 36(2):167-74 https://doi.org/10.1002/humu.22684
PMID: 25196204


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