A Cancer Panel Analysis Pipeline (CPAP) uses input files from variant calling software to generate a distribution map of SNPs among all of the samples. It also integrates additional information about the identified SNPs by linking to an integrated SQL database compiled from SNP-related databases, including dbSNP, 1000 Genomes Project, COSMIC, and dbNSFP.
Biology, Genetics, Genetic variation, DNA polymorphism
Huang PJ, Yeh YM, Gan RC, Lee CC, Chen TW, Lee CY, Liu H, Chen SJ, Tang P "CPAP: Cancer Panel Analysis Pipeline." Hum. Mutat. 2013; 34(10):1340-6 https://doi.org/10.1002/humu.22386
PMID: 23893859
Huang PJ, Lee CC, Tan BC, Yeh YM, Huang KY, Gan RC, Chen TW, Lee CY, Yang ST, Liao CS, Liu H, Tang P "Vanno: a visualization-aided variant annotation tool." Hum. Mutat. 2015; 36(2):167-74 https://doi.org/10.1002/humu.22684
PMID: 25196204
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