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CloVR-Comparative

CloVR-Comparative

A desktop virtual machine providing several automated microbial genomics analysis pipelines, such as 16S, whole genome and metagenome sequence analyses. It also supports use of remote cloud computing resources.

Topic

Biology, Genetics, Microbiology, Computational biology, Sequence analysis

Details

  • Operation: Analysis, Sequence analysis, Nucleic acid analysis
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: clovr-1.0-RC9
  • Credit: Agrawal S, Arze C, Adkins RS, Crabtree J, Riley D, Vangala M, Galens K, Fraser CM, Tettelin H, White O, Angiuoli SV, Mahurkar A, Fricke WF.
  • Contact: sangiuoli at som.umaryland.edu, w.florian.fricke at uni-hohenheim.de
  • Collection: -

Publications

Agrawal S, Arze C, Adkins RS, Crabtree J, Riley D, Vangala M, Galens K, Fraser CM, Tettelin H, White O, Angiuoli SV, Mahurkar A, Fricke WF "CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline." BMC Genomics 2017; 18(1):332 https://doi.org/10.1186/s12864-017-3717-3
PMID: 28449639
PMCID: PMC5408420


Angiuoli SV, Matalka M, Gussman A, Galens K, Vangala M, Riley DR, Arze C, White JR, White O, Fricke WF "CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing." BMC Bioinformatics 2011 https://doi.org/10.1186/1471-2105-12-356
PMID: 21878105
PMCID: PMC3228541


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