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Clumpak

Clumpak

Clumpak (Clustering Markov Packager Across K) is a tool to automate the postprocessing of model-based population structure analyses. The pipeline includes a pipeline for the summation and graphical representation of the results from a STRUCTURE-like program.

Topic

Population genetics

Details

  • Operation: Genetic variation analysis
  • Software interface: Web user interface; command-line user interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; (Microsoft Windows)
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: The Edmond J. Safra postdoctoral fellowship at Tel Aviv University (NMK), NIH grant R01 HG005855 (NAR).
  • Contact: evolseq _at_ post.tau.ac.il
  • Collection: -

Publications

Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I "Clumpak: a program for identifying clustering modes and packaging population structure inferences across K." Mol Ecol Resour. 2015 Sep;15(5):1179-91. Feb 27. https://doi.org/10.1111/1755-0998.12387
PMID: 25684545
PMCID: PMC4534335


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