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Crossbow

A pipeline for whole genome re-sequencing. It combines BOWTIE, SoapSNP, and a genotyper.

Topic

Genomics, Mapping, Genomic variation

Details

Operation: Genotyping, SNP detection, Read mapping, Service composition
Software interface: Command-line interface
Language: Perl
Operating system: Linux, Microsoft Windows, Mac OS X
License: GNU GPL v3

Cost

Version name: 1.2.1

Credit: Gurtowski J, Schatz MC, Langmead B.
Contact: Ben Langmead langmead at umd.edu
Collection: -

Publications

Gurtowski J, Schatz MC, Langmead B "Genotyping in the cloud with Crossbow." Curr Protoc Bioinformatics 2012 https://doi.org/10.1002/0471250953.bi1503s39
PMID: 22948728
PMCID: PMC3465669

Download and documentation

Source: https://github.com/BenLangmead/crossbow
Documentation: http://bowtie-bio.sourceforge.net/crossb
ow/manual.shtml
Home page: http://bowtie-bio.sourceforge.net/crossb
ow/index.shtml

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