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Crossbow

Crossbow

A pipeline for whole genome re-sequencing. It combines BOWTIE, SoapSNP, and a genotyper.

Topic

Genomics, Mapping, Genomic variation

Details

  • Operation: Genotyping, SNP detection, Read mapping, Service composition
  • Software interface: Command-line interface
  • Language: Perl
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: GNU GPL v3
  • Cost: -
  • Version name: 1.2.1
  • Credit: Gurtowski J, Schatz MC, Langmead B.
  • Contact: Ben Langmead langmead at umd.edu
  • Collection: -

Publications

Gurtowski J, Schatz MC, Langmead B "Genotyping in the cloud with Crossbow." Curr Protoc Bioinformatics 2012 https://doi.org/10.1002/0471250953.bi1503s39
PMID: 22948728
PMCID: PMC3465669


Download and documentation




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