For better experience, turn on JavaScript!



A pipeline for whole genome re-sequencing. It combines BOWTIE, SoapSNP, and a genotyper.


Genomics, Mapping, Genomic variation


  • Operation: Genotyping, SNP detection, Read mapping, Service composition
  • Software interface: Command-line interface
  • Language: Perl
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: GNU GPL v3
  • Cost: -
  • Version name: 1.2.1
  • Credit: Gurtowski J, Schatz MC, Langmead B.
  • Contact: Ben Langmead langmead at
  • Collection: -


Gurtowski J, Schatz MC, Langmead B "Genotyping in the cloud with Crossbow." Curr Protoc Bioinformatics 2012
PMID: 22948728
PMCID: PMC3465669

Download and documentation

If you find errors, please report here.