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DBM

A dynamic Bayesian Markov model (DBM) for simultaneous genotype calling and haplotype phasing in low-coverage NGS data of unrelated individuals.

Topic

Biology, Genetics, DNA polymorphism

Details

Operation: Genotyping experiment
Software interface: Command-line interface
Language: -
Operating system: Linux, Mac OS X
License: Not stated

Cost

Version name: -

Credit: Zhang Y.
Contact: Yu Zhang yuzhang at stat.psu.edu
Collection: -

Publications

Zhang Y "A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing." Bioinformatics 2013; 29(7):878-85 https://doi.org/10.1093/bioinformatics/btt065
PMID: 23407359
PMCID: PMC3656686

Download and documentation

Source: http://stat.psu.edu/~yuzhang/software/db
m.tar
Home page: -:

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