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Detection of intra-individual SNPs and InDels in direct amplicon sequencing of a diploid. No reference sequence required.


Biology, Genetics, Molecular genetics, Genetic variation, DNA polymorphism


  • Operation: Analysis, Genotyping
  • Software interface: Desktop graphical user interface
  • Language: Matlab R2011b and LabWindows/CVI 9.0.
  • Operating system: Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: 1.0
  • Credit: Jizhong Deng, Huasheng Huang, Xiaoli Yu, Ji Jin, Weisen Lin, Fagen Li, Zhijiao Song, Mei Li, Siming Gan.
  • Contact: -
  • Collection: -


Deng J, Huang H, Yu X, Jin J, Lin W, Li F, Song Z, Li M, Gan S "DiSNPindel: improved intra-individual SNP and InDel detection in direct amplicon sequencing of a diploid." BMC Bioinformatics 2015
PMID: 26498606
PMCID: PMC4619477

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