Software tools to detect single nucleotide polymorphism (SNP) and insertions and deletions (indels) without the need of a reference sequence.
Additional names: DiscoSnp++, DiscoSnpRad.
DNA polymorphism; Sequencing; Genetics; Genetic variation
Uricaru R, Rizk G, Lacroix V, Quillery E, Plantard O, Chikhi R, Lemaitre C, Peterlongo P "Reference-free detection of isolated SNPs." Nucleic Acids Res. 2015 Jan;43(2):e11. 17. https://doi.org/10.1093/nar/gku1187
PMID: 25404127
PMCID: PMC4333369
Pierre Peterlongo, Chloé Riou, Erwan Drezen "DiscoSnp++: de novo detection of small variants from raw unassembled read set(s)" bioRxiv 209965 https://doi.org/10.1101/209965
Jèrèmy Gauthier, Charlotte Mouden, Tomasz Suchan, Nadir Alvarez, Nils Arrigo, Chloé Riou, Claire Lemaitre, Pierre Peterlongo "DiscoSnp-RAD: de novo detection of small variants for population genomics" bioRxiv 216747 https://doi.org/10.1101/216747
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