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FunciSNP

FunciSNP

A tool to integrate functional non-coding data sets with genetic association studies for identification of regulatory SNPs.

Topic

GWAS study, ChIP-seq, Whole genome sequencing, Mapping

Details

  • Operation: Nucleic acid features, Linkage disequilibrium calculation, SNP annotation
  • Software interface: Command-line interface, library
  • Language: R
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: GNU GPL v3
  • Cost: -
  • Version name: 1.16.0
  • Credit: Coetzee SG, Rhie SK, Berman BP, Coetzee GA, Noushmehr H.
  • Contact: Simon G. Coetzee simon at simoncoetzee.com
  • Collection: -

Publications

Coetzee SG, Rhie SK, Berman BP, Coetzee GA, Noushmehr H "FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs." Nucleic Acids Res. 2012; 40(18):e139 https://doi.org/10.1093/nar/gks542
PMID: 22684628
PMCID: PMC3467035


Download and documentation




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