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GARLIC

GARLIC

A model-based method for inferring ROH in genome-wide SNP datasets with population-specific parameters and a genotyping error rate. A classification module to identify biologically interesting classes of ROH.

Topic

Genomics, Genotyping experiment, Genotype and phenotype

Details

Publications

Szpiech ZA, Blant A, Pemberton TJ "GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification." Bioinformatics 2017; 33(13):2059-2062 https://doi.org/10.1093/bioinformatics/btx102
PMID: 28205676
PMCID: PMC5870576


Pemberton TJ, Absher D, Feldman MW, Myers RM, Rosenberg NA, Li JZ "Genomic patterns of homozygosity in worldwide human populations." Am. J. Hum. Genet. 2012; 91(2):275-92 https://doi.org/10.1016/j.ajhg.2012.06.014
PMID: 22883143
PMCID: PMC3415543


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