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GeDi

GeDi

GeDi is a tool to call single nucleotide variants (SNV). The GeDi algorithm uses suffix-arrays and can define SNVs at complex variant loci and at low allele frequencies.

Topic

Biology, Genetics, Molecular genetics, Genetic variation, DNA polymorphism

Details

Publications

Coleman I, Corleone G, Arram J, Ng HC, Magnani L, Luk W "GeDi: applying suffix arrays to increase the repertoire of detectable SNVs in tumour genomes." BMC Bioinformatics (2020) 21(1): 45. https://doi.org/10.1186/s12859-020-3367-3
PMID: 32024475
PMCID: PMC7003401


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