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GenPlay

GenPlay

A multipurpose graphical genome analyzer. It displays tracks for gene structure, gene expression, repeat families, CPG islands, and custom tracks, e.g., RNA-Seq, Chip-Seq, TimEX-Seq, and single nucleotide polymorphism (SNP). It can also generate statttistics for minimum, maximum, SD, and correllation. The tool has Gaussian filter, peak finders, signal saturation, island finders, scatter plots, and bar charts.

Topic

Biology, Genetics, DNA polymorphism

Details

  • Operation: Visualisation, Filtering, Statistical calculation
  • Software interface: Desktop graphical user interface
  • Language: Java
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: GNU GPL v3
  • Cost: -
  • Version name: 1.1.0
  • Maturity: Stable
  • Credit: Lajugie J, Bouhassira EE.
  • Contact: eric.bouhassira at einstein.yu.edu
  • Collection: -

Publications

Lajugie J, Bouhassira EE "GenPlay, a multipurpose genome analyzer and browser." Bioinformatics 2011; 27(14):1889-93 https://doi.org/10.1093/bioinformatics/btr309
PMID: 21596789


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