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Workflows and methods, collections of genetic, genomic, and phenotype data for large families. Statistical analysis and gene mapping software for analysis of regulatory networks and genotype-to-phenotype relations. Graphical displays of variation in gene expression or other phenotypes, scatter plots of pairs of traits (Pearson or rank order), construction of both simple and complex network graphs, analysis of principal components and synthetic traits, QTL mapping using marker regression, interval mapping, and pair scans for epistatic interactions.


Sequence analysis, Mapping


  • Operation: Mapping, Genetic mapping, Correlation
  • Software interface: Web user interface
  • Language: Python, C, Java
  • License: AGPLv3
  • Cost: Free
  • Version name: -
  • Credit: Mulligan MK, Mozhui K, Prins P, Williams RW.
  • Contact: -
  • Collection: -


Mulligan MK1, Mozhui K2, Prins P3,2, Williams RW3. "GeneNetwork; A Toolbox for Systems Genetics." Methods Mol Biol. 2017;1488:75-120.
PMID: 27933521

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