A tool for file format conversion for pooled data. It solves unknown strands by aligment of A,T and G,C single nucleotide polymorphisms (SNPs) to a reference sequence, using linkage disequilibrium patterns. Supported file formats: PLINK, binary PLINK, VCF, SHAPEIT2, and Oxford GEN.
Biology, Genetics, DNA polymorphism
Deelen P, Bonder MJ, van der Velde KJ, Westra HJ, Winder E, Hendriksen D, Franke L, Swertz MA "Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration." BMC Res Notes 2014 https://doi.org/10.1186/1756-0500-7-901
PMID: 25495213
PMCID: PMC4307387
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