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HLA-check

Detects aberrant HLA allele calling in respect to SNP genotypes. Increases HLA imputation software accuracy.

Topic

Biology, Genetics, Molecular genetics, Genetic variation, DNA polymorphism

Details

Operation: Analysis, Genotyping
Software interface: Command-line interface
Language: C++ (with openMP)
License: The MIT licence

Cost

Version name: -

Credit: Jeanmougin M, Noirel J, Coulonges C, Zagury JF
Contact: -
Collection: -

Publications

Jeanmougin M, Noirel J, Coulonges C, Zagury JF "HLA-check: evaluating HLA data from SNP information." BMC Bioinformatics 2017; 18(1):334 https://doi.org/10.1186/s12859-017-1746-1
PMID: 28697761
PMCID: PMC5504728

Download and documentation

Source: https://github.com/mclegrand/HLA-check/
Home page: https://github.com/mclegrand/HLA-check/

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