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Heap

Heap

SNP calling in low coverage NGS data, aligned to the reference genome sequences. Heap determines genotypes and calls SNPs.

Topic

Genetics, Sequencing, DNA polymorphism, Genetic variation

Details

  • Operation: SNP detection
  • Software interface: Command-line interface
  • Language: C++
  • Operating system: Linux, Mac OS X
  • License: GNU GP v3
  • Cost: -
  • Version name: 0.8.0
  • Credit: Kobayashi M, Ohyanagi H, Takanashi H, Asano S, Kudo T, Kajiya-Kanegae H, Nagano AJ, Tainaka H, Tokunaga T, Sazuka T, Iwata H, Tsutsumi N, Yano K.
  • Contact: ¬†kyano at isc.meiji.ac.jp
  • Collection: -

Publications

Kobayashi M, Ohyanagi H, Takanashi H, Asano S, Kudo T, Kajiya-Kanegae H, Nagano AJ, Tainaka H, Tokunaga T, Sazuka T, Iwata H, Tsutsumi N, Yano K "Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data." DNA Res. 2017; 24(4):397-405 https://doi.org/10.1093/dnares/dsx012
PMID: 28498906
PMCID: PMC5737671


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