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IDCheck

IDCheck

A tool for comparison of the identity of RNA-seq reads and SNP genotypes using a likelihood based method.

Topic

Biology, Genetics, Genetic variation, DNA polymorphism

Details

  • Operation: Sequence comparison
  • Software interface: Command-line interface
  • Language: Python
  • Operating system: Linux, Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: 1.0.0
  • Credit: Huang J, Chen J, Lathrop M, Liang L.
  • Contact: lliang [at] hsph dot harvard dot edu, jhuang [at] hsph dot harvard dot edu
  • Collection: -

Publications

Huang J, Chen J, Lathrop M, Liang L "A tool for RNA sequencing sample identity check." Bioinformatics 2013; 29(11):1463-4 https://doi.org/10.1093/bioinformatics/btt155
PMID: 23559639


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