ITALICS

A tool to normalize Affymetrix GeneChip Human Mapping 100K and 500K sets.

Topic

DNA, Mapping

Details

Operation: Standardisation and normalisation
Software interface: Command-line interface, library
Language: R
Operating system: Linux, Microsoft Windows, Mac OS X
License: GNU GPL v2

Cost

Version name: 2.34.0

Credit: Rigaill G, Hupé P, Almeida A, La Rosa P, Meyniel JP, Decraene C, Barillot E.
Contact: Guillem Rigaill italics at curie.fr
Collection: -

Publications

Rigaill G, Hupé P, Almeida A, La Rosa P, Meyniel JP, Decraene C, Barillot E "ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays." Bioinformatics 2008; 24(6):768-74 https://doi.org/10.1093/bioinformatics/btn048
PMID: 18252739

Download and documentation

Source: http://bioconductor.org/packages/release
/bioc/html/ITALICS.html
Documentation: http://bioconductor.org/packages/release
/bioc/manuals/ITALICS/man/ITALICS.pdf
Home page: http://bioconductor.org/packages/release
/bioc/html/ITALICS.html

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