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Introgression browser (iBrowser)

Introgression browser (iBrowser)

Visualizes introgressions at nucleotide or SNP (Single Nucleotide Polymorphisms) accuracy. The software selects homozygous SNPs from Variant Call Format (VCF) and filters out heterozygous SNPs, multi-nucleotide polymorphisms and insertion-deletions.


Biology, Agricultural science, Genetics


  • Operation: Visualisation
  • Software interface: Web user interface
  • Language: Python
  • License: The MIT licence
  • Cost: Free
  • Version name: -
  • Credit: Saulo Alves Aflitos, Gabino Sanchezā€Perez, Dick de Ridder, Paul Fransz, Michael E Schranz, Hans de Jong, Sander A Peters.
  • Contact: -
  • Collection: -


Aflitos SA, Sanchez-Perez G, de Ridder D, Fransz P, Schranz ME, de Jong H, Peters SA "Introgression browser: high-throughput whole-genome SNP visualization." Plant J. 2015; 82(1):174-82
PMID: 25704554

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