For better experience, turn on JavaScript!


Introgression browser (iBrowser)

Introgression browser (iBrowser)

Visualizes introgressions at nucleotide or SNP (Single Nucleotide Polymorphisms) accuracy. The software selects homozygous SNPs from Variant Call Format (VCF) and filters out heterozygous SNPs, multi-nucleotide polymorphisms and insertion-deletions.

Topic

Biology, Agricultural science, Genetics

Details

  • Operation: Visualisation
  • Software interface: Web user interface
  • Language: Python
  • License: The MIT License (MIT)
  • Cost: -
  • Version name: -
  • Credit: Saulo Alves Aflitos, Gabino Sanchezā€Perez, Dick de Ridder, Paul Fransz, Michael E Schranz, Hans de Jong, Sander A Peters.
  • Contact: -
  • Collection: -

Publications

Aflitos SA, Sanchez-Perez G, de Ridder D, Fransz P, Schranz ME, de Jong H, Peters SA "Introgression browser: high-throughput whole-genome SNP visualization." Plant J. 2015; 82(1):174-82 https://doi.org/10.1111/tpj.12800
PMID: 25704554


Download and documentation




You may also like:



If you find errors, please report here.