Linkage mapping software for mapping high-throughput whole genome sequencing datasets. Allows cost-efficient genotyping of millions of single nucleotide polymorphisms (SNPs) for thousands of individual samples. Can be used for validation and refinement of de novo genome assemblies. It can analyse low-coverage datasets.
Biology, Genetics, Genotype and phenotype, Computational biology, Sequence analysis, Mapping
Rastas P "Lep-MAP3: robust linkage mapping even for low-coverage whole genome sequencing data." Bioinformatics 2017; 33(23):3726-3732 https://doi.org/10.1093/bioinformatics/btx494
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