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MADAP

MADAP

A clustering tool for genome annotation data mapped onto genome sequences, such as counts, probabilitites, intensities, SNP typing.

Topic

Gene transcripts, Mapping, ChIP-on-chip, Gene expression, Sequencing

Details

  • Operation: Clustering, Mapping
  • Software interface: Web user interface
  • Language: C++
  • Operating system: Linux, Mac OS X, Microsoft Windows
  • License: GNU GPL v2
  • Cost: -
  • Version name: -
  • Credit: Schmid CD, Sengstag T, Bucher P, Delorenzi M.
  • Contact: http://ccg.vital-it.ch/madap/webmail.html
  • Collection: -

Publications

Schmid CD, Sengstag T, Bucher P, Delorenzi M "MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data." Nucleic Acids Res. 2007; 35(Web Server issue):W201-5 https://doi.org/10.1093/nar/gkm343
PMID: 17526516
PMCID: PMC1933235


Schmid CD, Praz V, Delorenzi M, PĂ©rier R, Bucher P "The Eukaryotic Promoter Database EPD: the impact of in silico primer extension." Nucleic Acids Res. 2004; 32(Database issue):D82-5 https://doi.org/10.1093/nar/gkh122
PMID: 14681364
PMCID: PMC308856


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