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MOCSphaser

MOCSphaser

MOCSphaser is a tool to infer haplotypes and alleles from copy number variation (CNV) and single nucleotide polymorphism (SNP) data. The MOCSphaser algorithm uses expectation-maximization (EM) and can handle ambiguously determined copies originated from noisy data.

Topic

Genetics, DNA polymorphism

Details

  • Operation: Haplotype mapping
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux, Mac OS X
  • License: Not stated
  • Cost: Free for non-commercial use.
  • Version name: -
  • Maturity: Stable
  • Credit: Kato M, Nakamura Y, Tsunoda T.
  • Contact: Mamoru Kato mkato3000 at gmail.com
  • Collection: -

Publications

Kato M, Nakamura Y, Tsunoda T. "MOCSphaser: a haplotype inference tool from a mixture of copy number variation and single nucleotide polymorphism data." Bioinformatics 2008 Jul;24(14):1645-6. https://doi.org/10.1093/bioinformatics/btn242
PMID: 18492685
PMCID: PMC2638261


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