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MutDB

MutDB

A web-bassed tool to associate Swiss-Prot protein structures with annotated SNPs in dbSNP and amino acid substitutions.

Topic

Genetic variation, Proteins, Protein structure analysis, Gene structure

Details

  • Operation: Polymorphism detection, Sequence similarity search, Protein structure assignment, Structure database search, Protein modelling (mutation)
  • Software interface: Web user interface
  • Language: -
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: Singh A, Olowoyeye A, Baenziger PH, Dantzer J, Kann MG, Radivojac P, Heiland R, Mooney SD.
  • Contact: smooney at buckinstitute.org
  • Collection: -

Publications

Singh A, Olowoyeye A, Baenziger PH, Dantzer J, Kann MG, Radivojac P, Heiland R, Mooney SD "MutDB: update on development of tools for the biochemical analysis of genetic variation." Nucleic Acids Res. 2008; 36(Database issue):D815-9 https://doi.org/10.1093/nar/gkm659
PMID: 17827212
PMCID: PMC2238958


Mooney SD, Altman RB. "MutDB: annotating human variation with functionally relevant data." Bioinformatics. 2003 Sep 22;19(14):1858-60. https://doi.org/10.1093/bioinformatics/btg241
PMID: 14512363


Dantzer J, Moad C, Heiland R, Mooney S "MutDB services: interactive structural analysis of mutation data." Nucleic Acids Res. 2005; 33(Web Server issue):W311-4 https://doi.org/10.1093/nar/gki404
PMID: 15980479
PMCID: PMC1160165


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