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NucDiff

NucDiff

A tool to locate and categorize differences between two closely related nucleotide sequences. The results can be uploaded into genome browser for visualization.

Topic

Biology, Molecular genetics, Genetic variation

Details

  • Operation: Nucleic acid sequence comparison
  • Software interface: Command-line interface
  • Language: Python
  • Operating system: Linux, Mac OS X
  • License: Mozilla Public License Version 2.0
  • Cost: -
  • Version name: 1.0.0
  • Maturity: Stable
  • Credit: Khelik K, Lagesen K, Sandve GK, Rognes T, Nederbragt AJ.
  • Contact: -
  • Collection: -

Publications

Khelik K, Lagesen K, Sandve GK, Rognes T, Nederbragt AJ "NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences." BMC Bioinformatics 2017; 18(1):338 https://doi.org/10.1186/s12859-017-1748-z
PMID: 28701187
PMCID: PMC5508607


Download and documentation




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