An R package, implementing a statistical method for: i) genotyping from next-generation sequencing reads, and ii) conducting inference on allelic imbalance at heterozygous sites. The sequencing data can be RNA-seq, DNase-seq, ATAC-seq or any other type of high-throughput sequencing data.
Genetics, Statistics and probability, Sequencing, Genotyping experiment, RNA, RNA-seq
Harvey CT, Moyerbrailean GA, Davis GO, Wen X, Luca F, Pique-Regi R "QuASAR: quantitative allele-specific analysis of reads." Bioinformatics 2015; 31(8):1235-42 https://doi.org/10.1093/bioinformatics/btu802
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