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QuASAR

QuASAR

An R package, implementing a statistical method for: i) genotyping from next-generation sequencing reads, and ii) conducting inference on allelic imbalance at heterozygous sites. The sequencing data can be RNA-seq, DNase-seq, ATAC-seq or any other type of high-throughput sequencing data.

Topic

Genetics, Statistics and probability, Sequencing, Genotyping experiment, RNA, RNA-seq

Details

  • Operation: Genotyping
  • Software interface: Library
  • Language: R
  • Operating system: Linux, Microsoft Windows, Mac OS X
  • License: The MIT License (MIT)
  • Cost: -
  • Version name: 0.1
  • Credit: Chris T. Harvey Gregory A. Moyerbrailean Gordon O. Davis Xiaoquan Wen Francesca Luca Roger Pique-Regi
  • Contact: -
  • Collection: -

Publications

Harvey CT, Moyerbrailean GA, Davis GO, Wen X, Luca F, Pique-Regi R "QuASAR: quantitative allele-specific analysis of reads." Bioinformatics 2015; 31(8):1235-42 https://doi.org/10.1093/bioinformatics/btu802
PMID: 25480375
PMCID: PMC4393517


Download and documentation

Currently not available or not maintained.




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