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A user-friendly SNP detection and visualization tool. It Uses a haplotype-based strategy to identify reliable SNPs. It is optimized for the analysis of RNA-seq data, but it can also be used on genomic DNA sequences.


Computational biology, Genetic variation


  • Operation: Annotation, Sequence annotation, Visualisation, Sequence visualisation
  • Software interface: Desktop graphical user interface
  • Language: C++ (with QT toolkit)
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not specified
  • Cost: -
  • Version name: -
  • Credit: Nijveen H
  • Contact: harm.nijveen at
  • Collection: -


Nijveen H, van Kaauwen M, Esselink DG, Hoegen B, Vosman B "QualitySNPng: a user-friendly SNP detection and visualization tool." Nucleic Acids Res. 2013; 41(Web Server issue):W587-90
PMID: 23632165
PMCID: PMC3692117

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