A tool to detect single nucleotide polymorphism (SNP) in Illumina sequence data from population samples. The SNIP-Seq algorithm uses quality values of the sequenced bases and iterative estimates of genotypes and error rates based on multiple individuals.
Population genetics; DNA polymorphism
Bansal V, Harismendy O, Tewhey R, Murray SS, Schork NJ, Topol EJ, Frazer KA "Accurate detection and genotyping of SNPs utilizing population sequencing data." Genome Res. 2010 Apr;20(4):537-45. https://doi.org/10.1101/gr.100040.109
PMID: 20150320
PMCID: PMC2847757
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