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SNPServer

SNPServer

A web tool for discovery of SNPs (single nucleotide polymorphisms) within DNA sequence data. The program uses BLAST, to identify related sequences, and CAP3, to cluster and align these sequences. The alignments are parsed to autoSNP, a program that detects SNPs and insertion/deletion polymorphisms.

Topic

Biology, Molecular genetics, Genetic variation, DNA polymorphism

Details

  • Operation: Sequence analysis, Nucleic acid feature detection, Genetic variation analysis, SNP detection
  • Software interface: Web user interface
  • Language: -
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: Savage D, Batley J, Erwin T, Logan E, Love CG, Lim GA, Mongin E, Barker G, Spangenberg GC, Edwards D.
  • Contact: -
  • Collection: -

Publications

Savage D, Batley J, Erwin T, Logan E, Love CG, Lim GA, Mongin E, Barker G, Spangenberg GC, Edwards D "SNPServer: a real-time SNP discovery tool." Nucleic Acids Res. 2005; 33(Web Server issue):W493-5 https://doi.org/10.1093/nar/gki462
PMID: 15980519
PMCID: PMC1160223


Download and documentation

Currently not available or not maintained.




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