For better experience, turn on JavaScript!

SNPduo
Home » Tools » SNP Tools » SNPduo

SNPduo

A tool for analysis and visualization of Single Nucleotide Polymorphism (SNP) relatedness between two individuals. The SNPduo algorithm uses identity by a state to identify relatedness. The web implementation generates UCSC UCSC Genome Browser viewable tracks SNPduo.



SNPduo

A tool for analysis and visualization of Single Nucleotide Polymorphism (SNP) relatedness between two individuals. The SNPduo algorithm uses identity by a state to identify relatedness. The web implementation generates UCSC UCSC Genome Browser viewable tracks SNPduo.

Topic

DNA polymorphism; Genetics; Genetic variation

Details

  • Operation: SNP detection
  • Software interface: Web user interface; command-line user interface
  • Language: C++
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Other
    • Cost: Free
  • Version name: 2.0.0a
    • Maturity: Mature
  • Credit: The National Institutes of Health (NIH)
  • Contact: pevsner _at_ kennedykrieger.org
  • Collection: -

Publications

Roberson ED, Pevsner J "Visualization of shared genomic regions and meiotic recombination in high-density SNP data." PLoS One. 2009 Aug 21;4(8):e6711. https://doi.org/10.1371/journal.pone.0006711
PMID: 19696932
PMCID: PMC2725774


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads