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SNeP

SNeP

Estimates trends in effective population size trajectories using genome-wide SNP data. A user can adjust parameters for sample size, mutation, phasing, and recombination rate.

Topic

Biology, Genetics, Population genetics

Details

  • Operation: Statistical modelling
  • Software interface: Command-line interface
  • Language: C++
  • Operating system: Linux, Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: 1.1
  • Credit: Barbato M, Orozco-terWengel P, Tapio M, Bruford MW.
  • Contact: mario_barbato at hotmail.com
  • Collection: -

Publications

Barbato M, Orozco-terWengel P, Tapio M, Bruford MW "SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data." Front Genet 2015 https://doi.org/10.3389/fgene.2015.00109
PMID: 25852748
PMCID: PMC4367434


Download and documentation




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