Web-based tool, polymorphism discovery and analysis. 1. A pipeline combining tools to detect SNPs and to compute statistical indices and graphical layouts for SNP data. It sends sequences and genotyping data into a series of modules; physical mapping to a reference genome, annotation, SNP frequency determination in user-defined groups, haplotype reconstruction and network, linkage disequilibrium evaluation, and diversity analysis (Pi, Watterson's Theta, Tajima's D). 2. A database storing polymorphisms, genotyping data and grapevine sequences released by public and private projects.
Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros JP, Ruiz M, This P "SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects." BMC Bioinformatics 2011 https://doi.org/10.1186/1471-2105-12-134
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