A pipeline for building loci from short-read sequences to build genetic maps for population genomics and phylogeography. Works with restriction enzyme-based data, such as RAD-seq.
Mapping, Population genetics
Catchen J, Hohenlohe PA, Bassham S, Amores A, Cresko WA "Stacks: an analysis tool set for population genomics." Mol. Ecol. 2013; 22(11):3124-40 https://doi.org/10.1111/mec.12354
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