UGbS-Flex consists of a set of script to combine publicly available software tools for single nucleotide polymorphism (SNP) detection - genotyping by sequencing. The UGbS-Flex pipeline can use paired-end reads as an input.
DNA polymorphism; Genetics; Genetic variation
Qi P, Gimode D, Saha D, Schroder S, Chakraborty D, Wang X, Dida MM, Malmberg RL, Devos KM "UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study." BMC Plant Biol. 2018 Jun 15;18(1):117. https://doi.org/10.1186/s12870-018-1316-3
PMID: 29902967
PMCID: PMC6003085
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