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A Hidden Markov Model for SNP and indel identification in AB-SOLiD color-space, and regular letter-space reads.


DNA polymorphism, Genetic variation, Sequencing, Experimental design and studies


  • Operation: Genotyping, Variant calling, SNP detection
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux, Mac OSX, Microsoft Windows
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: Dalca AV, Rumble SM, Levy S, Brudno M.
  • Contact: varid at
  • Collection: -


Dalca AV, Rumble SM, Levy S, Brudno M. "VARiD: a variation detection framework for color-space and letter-space platforms." Bioinformatics 2010 Jun;26(12):i343-9.
PMID: 20529926
PMCID: PMC2881369

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