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VARiD

VARiD

A Hidden Markov Model for SNP and indel identification in AB-SOLiD color-space, and regular letter-space reads.

Topic

DNA polymorphism, Genetic variation, Sequencing, Experimental design and studies

Details

  • Operation: Genotyping, Variant calling, SNP detection
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux, Mac OSX, Microsoft Windows
  • License: Not stated
  • Cost: -
  • Version name: -
  • Credit: Dalca AV, Rumble SM, Levy S, Brudno M.
  • Contact: varid at cs.toronto.edu
  • Collection: -

Publications

Dalca AV, Rumble SM, Levy S, Brudno M. "VARiD: a variation detection framework for color-space and letter-space platforms." Bioinformatics 2010 Jun;26(12):i343-9. https://doi.org/10.1093/bioinformatics/btq184
PMID: 20529926
PMCID: PMC2881369


Download and documentation

Currently not available or not maintained.




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