A Hidden Markov Model for SNP and indel identification in AB-SOLiD color-space, and regular letter-space reads.
DNA polymorphism, Genetic variation, Sequencing, Experimental design and studies
Dalca AV, Rumble SM, Levy S, Brudno M. "VARiD: a variation detection framework for color-space and letter-space platforms." Bioinformatics 2010 Jun;26(12):i343-9. https://doi.org/10.1093/bioinformatics/btq184
PMID: 20529926
PMCID: PMC2881369
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