A pipeline (a wrapper) for next-generation (NGS) and Sanger sequence analysis. It can filter reads, map agaist a reference sequence, find single nucleotide polymorphism (SNPs), short sequence repeats (SSRs), and do funtional annotation.
Genomics
Blanca JM, Pascual L, Ziarsolo P, Nuez F, Cañizares J "ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using next generation sequence." BMC Genomics 2011 https://doi.org/10.1186/1471-2164-12-285
PMID: 21635747
PMCID: PMC3124440
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