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snp-search

snp-search

A management of single nucleotide polymorphisms (SNPs). It creates a local SQLite database and schema and outputs requested objects. The output contains detailed information about each SNP that can be filtered in various ways.

Topic

Biology, Genetic vairiation, DNA polymorphism

Details

  • Operation: Query and retrieval
  • Software interface: Command-line interface
  • Language: Ruby
  • Operating system: Linux
  • License: The MIT License
  • Cost: -
  • Version name: 2.12.0
  • Maturity:
  • Credit: Al-Shahib A, Underwood A.
  • Contact: ali.al-shahib at phe.gov.uk, anthony.underwood at phe.gov.uk
  • Collection: -

Publications

Al-Shahib A, Underwood A "snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing." BMC Bioinformatics 2013 https://doi.org/10.1186/1471-2105-14-326
PMID: 24246037
PMCID: PMC3840589


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