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traseR

An R package to analyze trait associated single nucleotide polymorphism (SNP) enrichment. Visualization of results.

Topic

Genetics, GWAS study, DNA polymorphism

Details

Operation: Pathway or network analysis, Statistical estimate score, Plot
Software interface: Command-line interface
Language: R
Operating system: Linux, Microsoft Windows, Mac OS X
License: GNU GPL v3

Cost

Version name: 1.4.0

Credit: Chen L, Qin ZS.
Contact: li chen li.chen at emory.edu
Collection: -

Publications

Chen L, Qin ZS "traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals." Bioinformatics 2016; 32(8):1214-6 https://doi.org/10.1093/bioinformatics/btv741
PMID: 26685307
PMCID: PMC5860183

Download and documentation

Source: http://bioconductor.org/packages/release
/bioc/html/traseR.html
Documentation: http://bioconductor.org/help/
Home page: http://bioconductor.org/packages/release
/bioc/html/traseR.html

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