For better experience, turn on JavaScript!

EMMAX
Home » Tools » GWAS tools and software » EMMAX

EMMAX

EMMAX (Efficient Mixed-Model Association eXpedited) is a tool for testing association mapping considering the sample structure in genome-wide association studies (GWAS). The EMMAX algorithm uses a variance component approach that can analyze GWAS datasets within hours.



EMMAX

EMMAX (Efficient Mixed-Model Association eXpedited) is a tool for testing association mapping considering the sample structure in genome-wide association studies (GWAS). The EMMAX algorithm uses a variance component approach that can analyze GWAS datasets within hours.

Topic

GWAS study

Details

  • Operation: Genetic mapping
  • Input: PED (PLINK)
  • Output: -
  • Software interface: Command-line user interface
  • Language: C++;C
  • Operating system: Linux
  • License: Not stated
    • Cost: Free
  • Version name: beta
  • Credit: National Science Foundation (NSF), National Institutes of Health (NIH), Microsoft Research, Samsung Scholarship, National Human Genome Research Institute, National Institute for Mental Health, GlaxoSmithKline, the University of California, Los Angeles, the National Toxicology Program and National Institute of Environmental Health Sciences; Perlegen Sciences.
  • Contact: h3kang _at_ umich.edu | sabatti _at_ stanford.edu | eeskin _at_ cs.ucla.edu
  • Collection: -

Publications

Kang HM, Sul JH, Service SK, Zaitlen NA, Kong SY, Freimer NB, Sabatti C, Eskin E "Variance component model to account for sample structure in genome-wide association studies." Nat Genet. 2010 Apr;42(4):348-54. https://doi.org/10.1038/ng.548
PMID: 20208533
PMCID: PMC3092069


Download and documentation







If you find errors, please report here.

SECTIONS

Tutorials
In-house software
Blog
News
Find Jobs
History
Definition of Bioinformatics
ENCYCLOPEDIA
COVID-19
⚬ Timeline of outbreak
⚬ Blog
⚬ Scientific Facts
⚬ Daily statistics
⚬ News


TOOLS


1. SNP Tools
2. GWAS Tools
3. Genotype Imputation Tools
4. MSA tools
5. CNV tools
6. WGA tools
7. RNA-seq tools
8. Proteomics Tools
9. Nucleic Acid Structure Analysis Tools
10. Nucleic Acid Sequence Analysis Tools
11. Sequence Logo Tools
12. In-house Software Tools

Find thousands of Bioinformatics and Life Science software tools and databases in the newly launched




Ads