GWIZ-Rscript

GWIZ-Rscript is a tool to assess the performance of genome-wide association studies (GWAS) for the prediction of disease risk. The GWIZ-Rscript algorithm uses ROC curves and calculates the AUROC using GWAS summary-level data.

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Topic
Publications
Download and documentation

GWIZ-Rscript

Topic

GWAS study; Genetics; Biomarkers; Pathology

Details

Operation: Collapsing methods; Genotyping; Regression analysis
Software interface: Command-line user interface
Language: R
Operating system: Linux; Mac OS X; Microsoft Windows
License: Not stated

Cost

Version name: -

Credit: Genome Canada, Genome Alberta, the Canadian Institutes of Health Research, the Canada Foundation for Innovation, the Natural Sciences and Engineering Research Council.
Contact: dwishart _at_ ualberta.ca
Collection: -

Publications

Patron J, Serra-Cayuela A, Han B, Li C, Wishart DS "Assessing the performance of genome-wide association studies for predicting disease risk." PLoS One 14(12): e0220215. https://doi.org/10.1371/journal.pone.0220215
PMID: 31805043
PMCID: PMC6894795

Download and documentation

Source: https://github.com/jonaspatronjp/GWIZ-Rs
cript/
Home page: https://github.com/jonaspatronjp/GWIZ-Rs
cript/

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GWIZ-Rscript

GWIZ-Rscript

Topic

Details

Publications

Download and documentation

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