IPGWAS is a pipeline tool that combines genome-wide association study (GWAS) and quality control. Apart from quality control, IPGWAS includes functions for Manhattan and quantile-quantile plots, and format conversion for genetic analyses, genotype phasing, and imputation.
Genetics; Genomics; GWAS study
Fan YH, Song YQ "IPGWAS: an integrated pipeline for rational quality control and association analysis of genome-wide genetic studies." Biochem. Biophys. Res. Commun. 2012; 422(3):363-8 https://doi.org/10.1016/j.bbrc.2012.04.117
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