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LocusZoom
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LocusZoom

LocusZoom (LocusZoom.js) is a tool for visualization of genome-wide association study (GWAS) scan results. LocusZoom uses LD information from HapMap, 1000 Genomes, gene information from the UCSC browser.



LocusZoom

LocusZoom (LocusZoom.js) is a tool for visualization of genome-wide association study (GWAS) scan results. LocusZoom uses LD information from HapMap, 1000 Genomes, gene information from the UCSC browser.

Topic

GWAS study

Details

  • Operation: Genetic variation analysis; Visualisation
  • Software interface: Web user user interface
  • Language: Python, R
  • Operating system: Linux
  • License: Other
    • Cost: Free
  • Version name: 1.4
  • Credit: Calvin College, the National Institue of Diabetes and Digestive and Kidney Diseases, the National Human Genome Research Institute, the National Institute of Mental Health, the National Heart, Lung, and Blood Institute.
  • Contact: cristen _at_ umich.edu
  • Collection: -

Publications

Pruim RJ, Welch RP, Sanna S, Teslovich TM, Chines PS, Gliedt TP, Boehnke M, Abecasis GR, Willer CJ "LocusZoom: regional visualization of genome-wide association scan results" Bioinformatics. 2010 Sep 15;26(18):2336-7. https://doi.org/10.1093/bioinformatics/btq419
PMID: 20634204
PMCID: PMC2935401


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