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Manhattan-Harvester is a tool to detect peaks genome-wide association study (GWAS) summary data. The Manhattan-Harvester also computes quality scores and various parameters to characterize individual peaks.


GWAS study; Genotype and phenotype


  • Operation: Peak detection; Peak calling; Imputation
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux; MAC OS X; Microsoft Windows
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 0.1
  • Maturity: Stable
  • Credit: European Union; ePerMed, Estonian Government, Estonian Center of Genomics-Roadmap II, the European Regional Development Fund, the US National Institute of Health.
  • Contact: T. Haller toomas.haller _at_ | toomashaller _at_
  • Collection: -


Haller T, Tasa T, Metspalu A "Manhattan Harvester and Cropper: a system for GWAS peak detection." BMC Bioinformatics. 2019 Jan 11;20(1):22.
PMID: 30634901
PMCID: PMC6330393

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