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Pascal
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Pascal

Pascal (Pathway scoring algorithm) is a tool to score and analyze pathways in genome-wide association study (GWAS) data. The algorithm uses enrichment strategies for scoring



Pascal

Pascal (Pathway scoring algorithm) is a tool to score and analyze pathways in genome-wide association study (GWAS) data. The algorithm uses enrichment strategies for scoring

Topic

GWAS study; Mapping; Molecular interactions, pathways and networks; Gene expression; RNA-Seq

Details

  • Operation: Enrichment analysis; Differential gene expression analysis; Expression analysis
  • Software interface: Command-line user interface
  • Language: Pascal
  • Operating system: Linux; Mac OS X
  • License: Not stated
    • Cost: Free
  • Version name: -
  • Credit: Fundación María José Jove, the ISCIII and FEDER.
  • Contact: aitana.alonso.glez _at_ gmail.com | manuel.calaza _at_ gmail.com | mariacristina.rodriguez.fontenla _at_ usc.es | angel.carracedo _at_ usc.es | aitana.alonso.glez _at_ gmail.com
  • Collection: -

Publications

Alonso-Gonzalez A, Calaza M, Rodriguez-Fontenla C, Carracedo A "Gene-based analysis of ADHD using PASCAL: a biological insight into the novel associated genes." BMC Med Genomics 12(1): 143. https://doi.org/10.1186/S12920-019-0593-5
PMID: 31651322
PMCID: PMC6813133


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