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PheGWAS is a tool for the visualization of multiple genotypes as 3D Manhattan plot landscapes.


Phenomics; GWAS study; DNA polymorphism; Lipids; Mapping


  • Operation: Visualisation
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU GPL v2
  • Cost: Free
  • Version name: 0.1.0
  • Credit: The National Institute for Health Research using Official Development Assistance (ODA).
  • Contact: George G george.gittu _at_
  • Collection: -


George G, Gan S, Huang Y, Appleby P, Nar AS, Venkatesan R, Mohan V, Palmer CNA, Doney ASF "PheGWAS: A New Dimension to Visualize GWAS Across Multiple Phenotypes" Bioinformatics. 2019 Dec 20;btz944.
PMID: 31860083

Download and documentation

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