Rainbow (Janssen R and D) is a wrapper for Crossbow pipeline tool (see links) whole-genome sequencing analysis. It can process single nucleotide polymorphism (SNP) data for genome-wide association studies (GWAS).
Zhao S, Prenger K, Smith L, Messina T, Fan H, Jaeger E, Stephens S. "Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing." BMC Genomics 2013 Jun;14():425. https://doi.org/10.1186/1471-2164-14-425
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