Scoary is a tool to score associations phenotypes to pan-genome components. The Scoary algorithm considers population stratification with the least possible assumptions of evolutionary processes and outputs a list of genes sorted by strength of trait association.
Genotype and phenotype; Model organisms; GWAS study; Functional genomics
Brynildsrud O, Bohlin J, Scheffer L, Eldholm V "Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary." Genome Biol. 2016; 17(1):238 https://doi.org/10.1186/s13059-016-1108-8
PMID: 27887642
PMCID: PMC5124306
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