XGR

XGR is a tool to evaluate genome-wide association study (GWAS) summary data and also quantitative trait loci (eQTL) data. XGR utilizes prior biological knowledge and relationships.

Topic

GWAS study; Genomics

Details

Operation: Sequence comparison
Software interface: Command-line user interface; Web user interface
Language: R
Operating system: Linux; Mac OS X; Microsoft Windows
License: GNU GPL v2

Cost

Version name: 1.1.7

Credit: European Research Council; the European Unions Seventh Framework Programme, the Medical Research Council, the European Commission, the Wellcome Trust, Wellcome Trust Centre for Human Genetics, the NIHR Oxford Biomedical Research Centre.
Contact: Hai Fang hfang _at_ well.ox.ac.uk
Collection: -

Publications

Fang H, Knezevic B, Burnham KL, Knight JC "XGR software for enhanced interpretation of genomic summary data, illustrated by application to immunological traits." Genome Med. 2016 Dec 13;8(1):129. https://doi.org/10.1186/s13073-016-0384-y
PMID: 27964755
PMCID: PMC5154134

Download and documentation

Source: http://xgr.r-forge.r-project.org/#instal
lation
Documentation: http://xgr.r-forge.r-project.org/
Home page: http://galahad.well.ox.ac.uk:3040

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